Selected publications

Full publication list at Google Scholar

Recent preprints

Community composition of microbial microcosms follows simple assembly rules at evolutionary timescales 

[bioRxiv] 2020. 

Nittay Meroz, Nesli Tovi, Yael Sorkin, and Jonathan Friedman

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Positive interactions within and between populations decrease the likelihood of evolutionary rescue

[bioRxiv] 2020. 

Yaron Goldberg and Jonathan Friedman

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Positive interactions are common among culturable bacteria

[bioRxiv] 2020. 

Jared Kehe, Anthony Ortiz, Anthony Kulesa,  Jeff Gore, Paul C. Blainey, and Jonathan Friedman

Published works

Massively parallel screening of synthetic microbial communities [pdf]

PNAS 2019.

Jared Kehe, Anthony Kulesa, Anthony Ortiz, Cheri M. Ackerman, Sri Gowtham Thakku, Daniel Sellers, Seppe Kuehn, Jeff Gore, Jonathan Friedman, and Paul C. Blainey

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Community structure follows simple assembly rules in microbial microcosms [pdf]
Nature Ecology and Evolution 2018.
Jonathan Friedman, Logan Higgins, and Jeff Gore

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Sympatric speciation: when is it possible in bacteria? [pdf]

PLoS One. 2013.

Jonathan Friedman, Eric J Alm, B Jesse Shapiro

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Inferring correlation networks from genomic survey data [pdf]
PLoS Comput Biol. 2012
Jonathan Friedman, Eric J Alm