Full publication list at Google Scholar
Positive interactions within and between populations decrease the likelihood of evolutionary rescue
Yaron Goldberg and Jonathan Friedman
Positive interactions are common among culturable bacteria
Jared Kehe, Anthony Ortiz, Anthony Kulesa, Jeff Gore, Paul C. Blainey, and Jonathan Friedman
Jared Kehe, Anthony Kulesa, Anthony Ortiz, Cheri M. Ackerman, Sri Gowtham Thakku, Daniel Sellers, Seppe Kuehn, Jeff Gore, Jonathan Friedman, and Paul C. Blainey
Community structure follows simple assembly rules in microbial microcosms [pdf]
Nature Ecology and Evolution 2018.
Jonathan Friedman, Logan Higgins, and Jeff Gore
Sympatric speciation: when is it possible in bacteria? [pdf]
PLoS One. 2013.
Jonathan Friedman, Eric J Alm, B Jesse Shapiro
Inferring correlation networks from genomic survey data [pdf]
PLoS Comput Biol. 2012
Jonathan Friedman, Eric J Alm