Selected publications

Full publication list at Google Scholar

Massively parallel screening of synthetic microbial communities [pdf]

PNAS 2019.

Jared Kehe, Anthony Kulesa, Anthony Ortiz, Cheri M. Ackerman, Sri Gowtham Thakku, Daniel Sellers, Seppe Kuehn, Jeff Gore, Jonathan Friedman, and Paul C. Blainey

Community structure follows simple assembly rules in microbial microcosms [pdf]
Nature Ecology and Evolution 2018.
Jonathan Friedman, Logan Higgins, and Jeff Gore

Sympatric speciation: when is it possible in bacteria? [pdf]

PLoS One. 2013.

Jonathan Friedman, Eric J Alm, B Jesse Shapiro

Structure, function and diversity of the healthy human microbiome [pdf]
Nature 2012.
Human Microbiome Project Consortium

Inferring correlation networks from genomic survey data [pdf]
PLoS Comput Biol. 2012
Jonathan Friedman, Eric J Alm